A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

abort() - Method in class org.tolven.security.auth.KeyLoginModule

Account - Class in org.tolven.core.entity

Maintains a collection of HealthRecords and related information.

Account() - Constructor for class org.tolven.core.entity.Account

Construct an empty Account or Sub-account.

accountBean - Variable in class org.tolven.app.bean.TrimBean

AccountDAOBean - Class in org.tolven.core.bean

This is the bean class for the AccountDAOBean enterprise bean.

AccountDAOBean() - Constructor for class org.tolven.core.bean.AccountDAOBean

AccountDAOLocal - Interface in org.tolven.core

This is the business interface for AccountDAO enterprise bean.

AccountDAORemote - Interface in org.tolven.core

AccountExchange - Class in org.tolven.core.entity

This entity represents allowable points of exchange between accounts.

AccountExchange() - Constructor for class org.tolven.core.entity.AccountExchange

AccountExchange.Direction - Enum in org.tolven.core.entity

AccountMenuStructure - Class in org.tolven.app.entity

An occurance of this object defines an item in an application menu structure.

AccountMenuStructure() - Constructor for class org.tolven.app.entity.AccountMenuStructure

AccountMenuStructure(Account, AccountMenuStructure, String, String, int, String, String, String, String, String) - Constructor for class org.tolven.app.entity.AccountMenuStructure

AccountPrivateKeyTestCase - Class in test.org.tolven.security.key

This class is used to testing AccountPrivateKey.

AccountPrivateKeyTestCase() - Constructor for class test.org.tolven.security.key.AccountPrivateKeyTestCase

AccountProcessingProtectionBean - Class in org.tolven.security.bean

This class protects document content during processing

AccountProcessingProtectionBean() - Constructor for class org.tolven.security.bean.AccountProcessingProtectionBean

AccountProcessingProtectionLocal - Interface in org.tolven.security

This interface protects the DocBase by handling its encryption and decryption.

AccountProcessingProtectionRemote - Interface in org.tolven.security

This interface protects the DocBase by handling its encryption and decryption.

AccountPublicKeyTestCase - Class in test.org.tolven.security.key

This class is used to testing AccountPublicKey.

AccountPublicKeyTestCase() - Constructor for class test.org.tolven.security.key.AccountPublicKeyTestCase

AccountRole - Class in org.tolven.core.entity

A list of possible roles for an account

AccountRole() - Constructor for class org.tolven.core.entity.AccountRole

AccountSecretKeyTestCase - Class in test.org.tolven.security.key

This class is used to testing AccountSecretKey.

AccountSecretKeyTestCase() - Constructor for class test.org.tolven.security.key.AccountSecretKeyTestCase

AccountTemplate - Class in org.tolven.core.entity

AccountTemplate() - Constructor for class org.tolven.core.entity.AccountTemplate

AccountType - Class in org.tolven.core.entity

AccountType.java Created on April 6, 2006, 12:30 PM AccountType controls basic, low-level behavior of an account.

AccountType() - Constructor for class org.tolven.core.entity.AccountType

Creates a new instance of AccountType

accountTypeConversion() - Method in interface org.tolven.core.AccountDAOLocal

One-time migration 5-Nov-2006 for Accounts without an AccountType.

accountTypeConversion() - Method in class org.tolven.core.bean.AccountDAOBean

One-time migration 5-Nov-2006 for Accounts without an AccountType.

AccountUser - Class in org.tolven.core.entity

Specifies which users can participate in a given account.

AccountUser() - Constructor for class org.tolven.core.entity.AccountUser

Construct an empty AccountUser.

AccountUserRole - Class in org.tolven.core.entity

A list of roles held by a particular AccountUser

AccountUserRole() - Constructor for class org.tolven.core.entity.AccountUserRole

Act - Class in org.tolven.trim

Java class for Act complex type.

Act() - Constructor for class org.tolven.trim.Act

ActClass - Enum in org.tolven.trim

Java class for ActClass.

ActEx - Class in org.tolven.trim.ex

ActEx() - Constructor for class org.tolven.trim.ex.ActEx

activate(String, long, Date) - Method in class org.tolven.security.bean.LoginBean

Activate a user.

activate(String, long, Date) - Method in interface org.tolven.security.LoginLocal

Activate a user.

activate(String, long, Date) - Method in interface org.tolven.security.LoginRemote

Activate a user.

ActivateInvitation - Class in org.tolven.admin

Java class for ActivateInvitation complex type.

ActivateInvitation() - Constructor for class org.tolven.admin.ActivateInvitation

ActivationBean - Class in org.tolven.core.bean

ActivationBean provides functions associated with activating users and accounts.

ActivationBean() - Constructor for class org.tolven.core.bean.ActivationBean

ActivationLocal - Interface in org.tolven.core

This is the business interface for CoreService enterprise bean.

ActivationRemote - Interface in org.tolven.core

activeInvitations() - Method in class org.tolven.core.bean.InvitationBean

Return a list of all active invitations.

Activity - Class in org.tolven.ctom.entity

An activity/event consists of performing a healthcare procedure on, or administering treatment to, a subject on a study.

Activity() - Constructor for class org.tolven.ctom.entity.Activity

ActivityRelationship - Class in org.tolven.ctom.entity

The semantic link between activities.

ActivityRelationship() - Constructor for class org.tolven.ctom.entity.ActivityRelationship

ActMood - Enum in org.tolven.trim

Java class for ActMood.

ActorReferenceType - Class in org.tolven.ccr

Java class for ActorReferenceType complex type.

ActorReferenceType() - Constructor for class org.tolven.ccr.ActorReferenceType

ActorReferenceTypeWrapper - Class in org.tolven.ccr

A wrapper class used in rules to encapsulate an ActorReference.

ActorReferenceTypeWrapper(ContinuityOfCareRecord, ActorReferenceType) - Constructor for class org.tolven.ccr.ActorReferenceTypeWrapper

ActorType - Class in org.tolven.ccr

Java class for ActorType complex type.

ActorType() - Constructor for class org.tolven.ccr.ActorType

ActorType.Address - Class in org.tolven.ccr

Java class for anonymous complex type.

ActorType.Address() - Constructor for class org.tolven.ccr.ActorType.Address

ActorType.InformationSystem - Class in org.tolven.ccr

Java class for anonymous complex type.

ActorType.InformationSystem() - Constructor for class org.tolven.ccr.ActorType.InformationSystem

ActorType.Organization - Class in org.tolven.ccr

Java class for anonymous complex type.

ActorType.Organization() - Constructor for class org.tolven.ccr.ActorType.Organization

ActorType.Person - Class in org.tolven.ccr

Java class for anonymous complex type.

ActorType.Person() - Constructor for class org.tolven.ccr.ActorType.Person

ActorType.Person.Name - Class in org.tolven.ccr

Java class for anonymous complex type.

ActorType.Person.Name() - Constructor for class org.tolven.ccr.ActorType.Person.Name

ActParticipation - Class in org.tolven.trim

Java class for ActParticipation complex type.

ActParticipation() - Constructor for class org.tolven.trim.ActParticipation

ActRelationship - Class in org.tolven.trim

Java class for ActRelationship complex type.

ActRelationship() - Constructor for class org.tolven.trim.ActRelationship

ActRelationshipCheckpoint - Enum in org.tolven.trim

Java class for ActRelationshipCheckpoint.

ActRelationshipDirection - Enum in org.tolven.trim

Java class for ActRelationshipDirection.

ActRelationshipJoin - Enum in org.tolven.trim

Java class for ActRelationshipJoin.

ActRelationshipSplit - Enum in org.tolven.trim

Java class for ActRelationshipSplit.

ActRelationshipSubset - Enum in org.tolven.trim

Java class for ActRelationshipSubset.

ActRelationshipType - Enum in org.tolven.trim

Java class for ActRelationshipType.

ActStatus - Enum in org.tolven.trim

Java class for ActStatus.

ActTests - Class in test.org.tolven.trim

ActTests() - Constructor for class test.org.tolven.trim.ActTests

ActTransition - Class in org.tolven.trim

Java class for ActTransition complex type.

ActTransition() - Constructor for class org.tolven.trim.ActTransition

ActTransitions - Class in org.tolven.trim

Java class for ActTransitions complex type.

ActTransitions() - Constructor for class org.tolven.trim.ActTransitions

ActXMLTests - Class in test.org.tolven.trim.xml

ActXMLTests() - Constructor for class test.org.tolven.trim.xml.ActXMLTests

AD - Class in org.tolven.trim

Java class for AD complex type.

AD() - Constructor for class org.tolven.trim.AD

addAccountUser(Account, TolvenUser, Date, boolean) - Method in interface org.tolven.core.AccountDAOLocal

addAccountUser(Account, TolvenUser, Date, boolean) - Method in interface org.tolven.core.AccountDAORemote

addAccountUser(Account, TolvenUser, Date, boolean) - Method in class org.tolven.core.bean.AccountDAOBean

Associate a user with an account without sending using invitation

addActor() - Method in class org.tolven.gen.model.GenMedicalCCR

addActRelationship(Act, ActRelationship) - Method in class org.tolven.trim.ex.TrimFactory

addCopyOfMenuStructure(Account, AccountMenuStructure) - Method in class org.tolven.app.bean.MenuBean

Add a node to the targetAccount based on the source menuStructure entry.

addFilter(String, Object) - Method in class org.tolven.app.entity.QueryControl

Add an entry to the collection of filters.

addFunction(String, String, Method) - Method in class org.tolven.app.el.ExpressionEvaluator

addFunction(String, String, Method) - Method in class org.tolven.app.el.TolvenFunctionMapper

addFunctions(String, Class) - Method in class org.tolven.app.el.ExpressionEvaluator

addFunctions(String, String) - Method in class org.tolven.app.el.ExpressionEvaluator

addLocation(ProviderLocation) - Method in class org.tolven.provider.entity.Provider

addMail(String) - Method in class org.tolven.security.TolvenPerson

Add an eMail item to this context.

addMatcher(Matcher) - Method in class org.tolven.gen.model.GenSource

Add a Matcher

addMember(FamilyMember) - Method in class org.tolven.gen.entity.FamilyUnit

Add a family member to this family unit and also set the reference in the member to this family unit.

addMember(VirtualPerson, FamilyMember.FamilyMemberRole) - Method in class org.tolven.gen.entity.FamilyUnit

Add a person to this family unit in the specified role.

addMyProvider(long, long) - Method in class org.tolven.provider.bean.ProviderBean

Add a provider to the (personal) account's list of providers.

addMyProvider(long, long) - Method in interface org.tolven.provider.ProviderLocal

Add a provider to the (personal) account's list of providers.

addNewActor() - Method in class org.tolven.ccr.ContinuityOfCareRecord

Create a new actor.

addNewPatient() - Method in class org.tolven.ccr.ContinuityOfCareRecord

Add a new patient actor to the document and return the actor.

addParticipation(Act, ActParticipation) - Method in class org.tolven.trim.ex.TrimFactory

addPatient(ActorType) - Method in class org.tolven.ccr.ContinuityOfCareRecord

The actor already exists, we're just adding this actor as the patient.

addPerformanceData(Date, String, String, Long, String, String, String, double, String) - Method in class org.tolven.core.bean.PerformanceDataDAOBean

addPerformanceData(PerformanceData) - Method in class org.tolven.core.bean.PerformanceDataDAOBean

Add performance data

addPerformanceData(Date, String, String, Long, String, String, String, double, String) - Method in interface org.tolven.core.PerformanceDataDAO

addPerformanceData(PerformanceData) - Method in interface org.tolven.core.PerformanceDataDAO

addPerson(TolvenPerson) - Method in class org.tolven.security.bean.LDAPBean

Add a new person to LDAP DB.

addPerson(TolvenPerson) - Method in interface org.tolven.security.LDAPLocal

Add a new person to LDAP DB.

addPhrase(String, String, String) - Method in class org.tolven.app.entity.MenuData

Add a phrase to this MenuData Item's word list.

addPlaceholderID(String, String, String) - Method in class org.tolven.app.entity.MenuData

Add a new id to the existing list of placeholders as long as the new id is unique.

addProviderToPatientLink(Long, CopyTo) - Method in class org.tolven.app.bean.AppEvalAdaptor

addProviderToPatientLink(long, long) - Method in class org.tolven.provider.bean.ProviderBean

Add (or change) a provider in a patient link

addProviderToPatientLink(long, long) - Method in interface org.tolven.provider.ProviderLocal

Add (or change) a provider in a patient link

addRepeatProbability(double) - Method in class org.tolven.gen.model.GenSource

AddressPartType - Enum in org.tolven.trim

Java class for AddressPartType.

AddressUse - Enum in org.tolven.trim

Java class for AddressUse.

addScenario(ProbabilityScenario) - Method in class org.tolven.gen.model.ChooseScenario

Add a Scenario

addScenario(Scenario) - Method in class org.tolven.gen.model.GroupScenario

Add a Scenario

addSecurityQuestion(SecurityQuestion) - Method in class org.tolven.security.bean.PasswordRecoveryBean

addSecurityQuestion(SecurityQuestion) - Method in interface org.tolven.security.PasswordRecoveryRemote

addSpecialty(ProviderSpecialty) - Method in class org.tolven.provider.entity.Provider

addStudySite(StudySite) - Method in class org.tolven.ctom.entity.Study

addSubjectAssignment(SubjectAssignment) - Method in class org.tolven.ctom.entity.StudySite

addTolvenEventId(TolvenIdEx) - Method in class org.tolven.trim.ex.TrimEx

Add a new tolvenId (or replace an existing one) for an account.

addTolvenId(TolvenIdEx) - Method in class org.tolven.trim.ex.TrimEx

Add a new tolvenId (or replace an existing one) for an account

addUniqueII(SETIISlot, II) - Method in class org.tolven.app.bean.CreatorBean

addUniqueII(II) - Method in class org.tolven.trim.ex.SETIISlotEx

Add a unique II to the LIST of IIs as if it were a set.

addVariable(String, Object) - Method in class org.tolven.app.el.ExpressionEvaluator

Add a variable to this EL context

addVariables(Map<String, Object>) - Method in class org.tolven.app.el.ExpressionEvaluator

Add a map of variables to this EL context

addWidth(Date, PQ) - Static method in class org.tolven.process.ComputePlan

addWord(String, int, String, String) - Method in class org.tolven.app.entity.MenuData

Add a word to this MenuData Item we quietly ignore duplicates.

ADEx - Class in org.tolven.trim.ex

ADEx() - Constructor for class org.tolven.trim.ex.ADEx

AdministrativeDetail - Class in org.tolven.admin

Java class for AdministrativeDetail complex type.

AdministrativeDetail() - Constructor for class org.tolven.admin.AdministrativeDetail

ADPartsMap - Class in org.tolven.trim.ex

This class returns a formatted string based on the parts of the address.

ADPartsMap(ADEx) - Constructor for class org.tolven.trim.ex.ADPartsMap

ADSlot - Class in org.tolven.trim

Java class for ADSlot complex type.

ADSlot() - Constructor for class org.tolven.trim.ADSlot

ADSlotEx - Class in org.tolven.trim.ex

ADSlotEx() - Constructor for class org.tolven.trim.ex.ADSlotEx

ADSlotMap - Class in org.tolven.trim.ex

This class returns an EntityName (EN) with the use code specified in the map parameter.

ADSlotMap(ADSlotEx) - Constructor for class org.tolven.trim.ex.ADSlotMap

AdverseEvent - Class in org.tolven.ctom.entity

An unfavorable and unintended reaction, symptom, syndrome, or disease encountered by a subject while on a clinical trial regardless of whether or not it is considered related to the product or procedure.

AdverseEvent() - Constructor for class org.tolven.ctom.entity.AdverseEvent

AdverseEventReport - Class in org.tolven.ctom.entity

A written notification to a reporting authority, i.e.

AdverseEventReport() - Constructor for class org.tolven.ctom.entity.AdverseEventReport

AdverseEventTherapy - Class in org.tolven.ctom.entity

Therapy required to treat an adverse event.

AdverseEventTherapy() - Constructor for class org.tolven.ctom.entity.AdverseEventTherapy

ADXPSlot - Class in org.tolven.trim

Java class for ADXPSlot complex type.

ADXPSlot() - Constructor for class org.tolven.trim.ADXPSlot

AgeFormat - Class in org.tolven.app.el

AgeFormat() - Constructor for class org.tolven.app.el.AgeFormat

Agent - Class in org.tolven.ccr

Java class for Agent element declaration.

Agent() - Constructor for class org.tolven.ccr.Agent

Agent - Class in org.tolven.ctom.entity

A chemical or biological substance with specific characteristics used in a study for treatment or prevention of cancer or another disease as specified by the study.

Agent() - Constructor for class org.tolven.ctom.entity.Agent

Agent.EnvironmentalAgents - Class in org.tolven.ccr

Java class for anonymous complex type.

Agent.EnvironmentalAgents() - Constructor for class org.tolven.ccr.Agent.EnvironmentalAgents

Agent.Problems - Class in org.tolven.ccr

Java class for anonymous complex type.

Agent.Problems() - Constructor for class org.tolven.ccr.Agent.Problems

Agent.Products - Class in org.tolven.ccr

Java class for anonymous complex type.

Agent.Products() - Constructor for class org.tolven.ccr.Agent.Products

Agent.Results - Class in org.tolven.ccr

Java class for anonymous complex type.

Agent.Results() - Constructor for class org.tolven.ccr.Agent.Results

AgentRelationship - Class in org.tolven.ctom.entity

Association between compound agent and component agents.

AgentRelationship() - Constructor for class org.tolven.ctom.entity.AgentRelationship

AgentSynonym - Class in org.tolven.ctom.entity

The various name(s) attributed to a chemical or biological substance used as part of a study for the treatment or prevention of disease.

AgentSynonym() - Constructor for class org.tolven.ctom.entity.AgentSynonym

AlertType - Class in org.tolven.ccr

Java class for AlertType complex type.

AlertType() - Constructor for class org.tolven.ccr.AlertType

allowRoles - Variable in class org.tolven.app.entity.AccountMenuStructure

alphabet - Static variable in class org.tolven.core.bean.AccountDAOBean

Amendment - Class in org.tolven.ctom.entity

A written description of a change(s) to or formal clarification of a study.

Amendment() - Constructor for class org.tolven.ctom.entity.Amendment

analyzeCauses(String, int[][]) - Method in class org.tolven.gen.util.GenerateCauseOfDeath

Determine appropriate causes of death by age and sex.

analyzePlaces(String) - Method in class org.tolven.gen.util.GeneratePlace

Count how many household in the US (ignoring zip codes with less than 100 households) divided by 100.

ANGIOGRAPHY_TYPE - Static variable in class org.tolven.ccr.ResultType

AppEvalAdaptor - Class in org.tolven.app.bean

When processing a transaction, this class provides a connection between the Rule engine and the application (menu data and menuStructure).

AppEvalAdaptor() - Constructor for class org.tolven.app.bean.AppEvalAdaptor

Constructor

Application - Class in org.tolven.trim

An entry in this list indicates that the Trim be made available as a top-level, free-standing trim to the named application.

Application() - Constructor for class org.tolven.trim.Application

ApplicationEx - Class in org.tolven.trim.ex

ApplicationEx() - Constructor for class org.tolven.trim.ex.ApplicationEx

AppLocaleMap - Class in org.tolven.app.el

This class exists to handle the fact that JSF's method binding is limited to Map property type behavior

AppLocaleMap(AppLocaleText) - Constructor for class org.tolven.app.el.AppLocaleMap

AppLocaleMap(AppLocaleText, boolean) - Constructor for class org.tolven.app.el.AppLocaleMap

AppLocaleText - Interface in org.tolven.app

Provides specialized access to application-specific objects (MenuStructure, MSColumn etc) which require locale translations

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.AppointmentScenario

Actually create the appointment.

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.BatteryScenario

Apply a battery of tests.

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.ChooseScenario

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.CXRScenario

Actually create an X-Ray report at the start time (we ignore endTime).

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.GroupScenario

Apply a group of scenarios unconditionally.

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.LabTestScenario

Actually create a lab test at the start time (we ignore endTime).

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.ProbabilityScenario

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.RadiologyScenario

Actually create a radiology report at the start time (we ignore endTime).

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.RepeatScenario

To apply this scenario, we will modify the start time of the scenario to repeat to be the selected event time.

apply(GenMedical, Date, Date, RandomData) - Method in class org.tolven.gen.model.Scenario

AppMenu - Class in org.tolven.trim

Java class for AppMenu complex type.

AppMenu() - Constructor for class org.tolven.trim.AppMenu

AppointmentScenario - Class in org.tolven.gen.model

AppointmentScenario(String, String, String, String) - Constructor for class org.tolven.gen.model.AppointmentScenario

Generate an appoint for the specified purpose

Assessment - Class in org.tolven.ctom.entity

The subjective and objective interpretation or evaluation of raw clinical data captured via observations.

Assessment() - Constructor for class org.tolven.ctom.entity.Assessment

associateDocument(TolvenMessage, Account, Date) - Method in class org.tolven.doc.bean.Evaluator

Associate the document and attachments in the message with documents in the database either by finding document(s) or creating document(s).

AsthmaGen - Class in org.tolven.gen.model

AsthmaGen(RandomData) - Constructor for class org.tolven.gen.model.AsthmaGen

ATN - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrSat

ATNL - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrSab

Atom - Class in org.tolven.voc.umls.rrf.entity

The union of concept, term, string, and code from source terminologies.

Atom() - Constructor for class org.tolven.voc.umls.rrf.entity.Atom

Instantiates an empty Atom.

AtomAttribute - Class in org.tolven.voc.umls.rrf.entity

Entity class AtomAttribute

AtomAttribute() - Constructor for class org.tolven.voc.umls.rrf.entity.AtomAttribute

Creates a new instance of AtomAttribute

Attribute - Class in org.tolven.voc.umls.rrf.entity

Entity class Attribute

Attribute() - Constructor for class org.tolven.voc.umls.rrf.entity.Attribute

ATUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrDef

ATUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrSat

ATUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrSty

ATV - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrSat

AUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrCoc

AUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrConso

AUI - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrDef

AUI1 - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrRel

AUI2 - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrCoc

AUI2 - Static variable in interface org.tolven.voc.umls.rrf.columns.IMrRel

authenticate(String, char[]) - Method in class org.tolven.security.bean.LDAPBean

Authenticate the principalName and password against LDAP, and if successful return a context

authenticate(String, char[]) - Method in interface org.tolven.security.LDAPLocal

AuthorizationType - Class in org.tolven.ccr

Java class for AuthorizationType complex type.

AuthorizationType() - Constructor for class org.tolven.ccr.AuthorizationType

AuthorizationType.Immunizations - Class in org.tolven.ccr

Java class for anonymous complex type.

AuthorizationType.Immunizations() - Constructor for class org.tolven.ccr.AuthorizationType.Immunizations